Protein ZmHMG10
ZmHMG10 is a protein in the HMG family.
Information
Coreg Name: ZmHMG10
Species: Maize
Coreg Family: HMG
Gene Name(Synonym): HMG2
Uniprot ID: P93630
Subgenome: 1

Protein ZmHMG10

ZmHMG10 is a protein in the HMG family.

Overview of domains present in v5 transcripts
PF00505PF09011
Zm00001eb250190_T002
Zm00001eb250190_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d017555DAPseq no logo sequence fimo position
Zm00001d017555DAPseq no logo sequence fimo position
Zm00001d017555ChIPseq no logo sequence fimo position
Zm00001d017555PChIPseq no logo sequence fimo position

Interactions where ZmHMG10 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmHMG10 is the target  
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There are 82 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb250190_T002 from maize genome v5

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF09011
PF00505
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Nucleotide Sequence
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GAGCCCATTACACGTCCCGGTTCCA...

GRMZM2G013821_T01 from maize genome v3


Related TFome: pUT5584

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

Nucleotide Sequence
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GAGCCCATTACACGTCCCGGTTCCA...

GRMZM2G013821_T02 from maize genome v3

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

Nucleotide Sequence
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GAGCCCATTACACGTCCCGGTTCCA...

GRMZM2G013821_T03 from maize genome v3

Amino Acid Sequence
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MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSE
VDDEDGSSDEENDDDE

Nucleotide Sequence
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CCACCACCCTCTGTCTTCGCCTCCG...

Zm00001d017555_T001 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSHLAPCTPLSLYFFSC
AFAGILLVRGCGSGEQGSRGKVACYVRSSLFGWEKQPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVD
DEDGSSDEENDDDE

Nucleotide Sequence
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ACGCATCGCACAAACGCGCTCCCGG...

Zm00001d017555_T002 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

Nucleotide Sequence
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GCATCGCACAAACGCGCTCCCGGTC...

Zm00001d017555_T003 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKAII

Nucleotide Sequence
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GCACAAACGCGCTCCCGGTCCGAAA...

Zm00001d017555_T004 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKVILDLWSMLNSELFFSSLCHNLSI

Nucleotide Sequence
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ACCACCACCCTCTGTCTTCGCCTCC...

Zm00001d017555_T005 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKAII

Nucleotide Sequence
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ACCACCACCCTCTGTCTTCGCCTCC...

Zm00001d017555_T006 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKSTSSKKAKTEDEDGSKSEVDDEDGSSDEENDDDE

Nucleotide Sequence
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CCTCTGTCTTCGCCTCCGCTGCCGA...

Zm00001d017555_T007 from maize genome v4

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEK
QPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDEDGSSDEVQKIKPFTG

Nucleotide Sequence
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GCCTCCGCTGCCGATTCGAAAGCAC...

Zm00001d017555_T008 from maize genome v4

Amino Acid Sequence
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MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSE
VDDEDGSSDEENDDDE

Nucleotide Sequence
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GACTGCGCTGATCTTGTGGCGGAAC...

Zm00001eb250190_T001 from maize genome v5

Amino Acid Sequence
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MKGKADTSKKDEGRLRAGGAAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSHLAPCTPLSLYFFSC
AFAGILLVRGCGSGEQGSRGKVACYVRSREATICGPSWTEEAGL

Nucleotide Sequence
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GAGCCCATTACACGTCCCGGTTCCA...


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